PhenoTyper: Selected publications

Here is a selection of recent papers that mention the use of PhenoTyper. If you feel your paper should be on this list, please let us know at marcom@noldus.nl

2015

Aarts, E.; Maroteaux, G.; Loos, M.; Koopmans, B.; Kovačević, J.; Smit, A.B.; Verhage, M.; Sluis, S. van der; Neuro-BSIK Mouse Phenomics Consortium. (2015). The light spot test: measuring anxiety in mice in an automated home-cage environment. Behavioural Brain Research, in press, 10.1016/j.bbr.2015.06.011.

Loos, M.; Koopmans, B.; Maroteaux, G.; Sluis, S. van der; Neuro-BSIK Mouse Phenomics Consortium; Verhage, M.; Smit, A.B. (2015). Within-strain variation behavior differs consistently between common inbred strains of mice. Mammalian Genome, article in press, PMID: 26123533.

Morse, S.J.; Butler, A.A.; Davis, R.L.; Soller, I.J.; Lubin, F.D. (2015). Environmental enrichment reverses histone methylation changes in the aged hippocampus and restores age-related memory deficits. Biology4, 298-313.

Peters, S.M.; Pothuizen, H.H.J.; Spruijt, B.M. (2015). Ethological concepts enhance the translational value of animal models. European Journal of Pharmacology, doi: 10.1016/j.ejphar.2015.03.043.

Remmelink, E.; Loos, M.; Koopmans, B.; Aarts, E.; Sluis, S. van der; Smit, A.B.; Verhage, M.; Neuro-BSIK Mouse Phenomics Consortium. (2015). A 1-night operant learning task without food-restriction differentiates among mouse strains in an automated home-cage environment. Behavioural Brain Research, 283, 53–60.

2014

Clipperton-Allen, A.E.; Page, D.T. (2014). Pten haploinsufficient mice show broad brain overgrowth but selective impairments in autism-relevant behavioral tests. Human Molecular Genetics, 1-16.

Cotrina, M.L.; Chen, M.; Han, X.; Iliff, J.; Ren, Z.; Sun, W.; Hagemann, T.; Goldman, J.; Messing, A.; Nedergaard, M. (2014). Effects of traumatic brain injury on reactive astrogliosis seizures in mouse models of Alexander disease. Brain Research, doi: 10.1016/j.brainres.2014.07.029.

Desland, F.A.; Afzal, A.; Warraich, Z.; Mocco, J. (2014). Manual versus automated rodent behavioral assessment: comparing efficacy and ease of Bederson and Garcia neurological deficit scores to an open field video-tracking system. Journal of Central Nervous System Disease6, 7-14.

Erkens, M.; Bakker, B.; Duijn, van, L.M.; Hendriks, W.J.A.J.; Zee, van der, C.E.E.M. (2014). Protein tyrosine phosphatase receptor type R deficient mice exhibit increased exploration in a new environment and impaired novel object recognition memory. Behavioural Brain Research, doi: 10.1016/j.bbr.2014.02.014. 

Heinla, I.; Leidmaa, E.; Visnapuu, T.; Philips, M.A.; Vasar, E. (2014). Enrichment and individual housing reinforce the differences in aggressiveness and amphetamine response in 129S6/SvEv and C57BL/6 strains. Behavioural Brain Research267, 66-73.

Hsu, Y.W.; Wang, S.D.; Wang, S.; Morton, G.; Zariwala, H.A.; Iglesia, H.O. de la; Turner, E.E. (2014). Role of the dorsal medial habenula in the regulation of voluntary activity, motor function, hedonic state, and primary reinforcement. Journal of Neuroscience34(34), 11366-11384.

Lee, K.-N.; Pellom, S.T.; Oliver, E.; Chirwa, S. (2014). Characterization of the guinea pig animal model and subsequent comparison of the behavioral effects of selective dopaminergic drugs and methamphetamine. Synapse, accepted article, doi: 10.1002/syn.21731.

Loos, M.; Koopmans, B.; Aarts, E.; Maroteaux, G.; Sluis, S. van der; Neuro-BSIK Mouse Phenomics Consortium; Verhage, M.; Smit, A.B. (2014). Sheltering behavior and locomotor activity in 11 genetically diverse commen inbred mouse strains using home-cage monitoring. PLoS ONE9(9), e108563.

MacAskill, A.F.; Cassel, J.M.; Carter, A.G. (2014). Cocaine exposure reorganizes cell type- and input specific connectivity in the nucleus accumbens. Nature Neuroscience17(9), 1198-1207.
Molenhuis, R.; Visser, L. de; Bruining, H.; Kas, M.J. (2014). Enhancing the value of psychiatric mouse models; differential expression of developmental behavioral and cognitive profiles in four inbred strains of mice.  European Neuropsychopharmacology, doi: 10.1016/j.euro-neuro.2014.01.013.

Nikolaus, S.; Beu, M.; De-Souza-Silva, M.A.; Huston, J.P.; Hautzel, H.; Chao, O.Y.; Antke, C.; Müller, H.W. (2014). Frontiers in Behavioral Neuroscience, doi:10.3389/fnbeh.2014.00431.

Plucinska, K.; Crouch, B.; Koss, D.; Robinson, L.; Siebracht, M.; Riedel, G.; Platt, B. (2014). Knock-in of human BACE1 cleaves murine APP and reiterates Alzheimer-like phenotypes. The Journal of Neuroscience34(32), 10710-10728.

Seigers, R.; Loos, M.; Van Tellingen, O.; Boogerd, W.; Smit, A.B.; Schagen, S.B. (2014). Cognitive impact of cytotoxic agents in mice. Phychopharmacology, doi: 10.1007/s00213-014-3636-9.

Silvennoinen, M.; Rantalainen, T.; Kainulainen, H. (2014). Validation of a method to measure total spontenous physical activity of sedentary and voluntary running mice. Journal of Neuroscience Methods235, 51-58.

Spruijt, B.M.; Peters, S.M.; Heer, R.C. de; Pothuizen, H.H.J.; Harst, J.E. van der. (2014). Reproducibility and relevance of future behavioral sciences should benefit from a cross fertilization of past recommendations and today's technology: "Back to the future". Journal of Neuroscience Methods,  234, 2-12.

Older

Abs, E.; Goorden. S.M.I.; Schreiber, J.; Overwater, I.E.; Hoogeveen-Westerveld, M.; Bruinsma, C.F.; Aganovic, E.; Borgesius, N.Z.; Nellist, M.; Elgersma, Y. (2013). TORC1-dependent epilepsy caused by acute biallelic Tsc1 delection in adult mice. Annals of Neurology, doi: 10.1002/ana.23943

Babineau, B.A.; Yang, M.; Berman, R.F.; Crawley, J.N. (2013). Low home cage social behaviors in BTBR T+tf/J mice during juvenile development. Physiology & Behavior, 114-115, 49-54.

Baiguera, C.; Alghisi, M.; Pinna, A.; Bellucci, A.; Luca, M.A. de; Frau, L.; Morelli, M.; Ingrassia, R.; Benarese, M.; Porrini, V.; Pellitteri, M.; Bertini, G.; Fabene, P.F.; Sigala, S.; Spillantini, M.G.; Liou, H.C.; Spano, P.F.; Pizzi, M. (2012). Late-onset Parkinsonism in NFκB/c-Rel-deficient mice. Brain, doi: 10.1093/brain/aws193.

Balemans, M.C.M.; Huibers, M.M.H.; Eikelenboom, N.W.D.;  Kuipers, A.J.; Summeren, R.C.J. van; Pijpers, M.M.C.A.;  Tachibana, M.; Shinkai, Y.; Bokhoven, H. van; Van der Zee, C.E.E.M. (2009). Reduced exploration, increased anxiety, and altered social behavior: Autistic-like features of euchromatin histone methyltransferase 1 heterozygous knockout mice. Behaviour Brain Research, article in press, doi: 10.1016/j.bbr.2009.11.008.

Brielmaier, J.; Matteson, P.G.; Silverman, J.L.; Senerth, J.M.; Kelly, S.; Genestine, M.; Millonig, J.H.; DiCicco-Bloom, E.; Crawley, J.N. (2012). Autism-relevant social abnormalities and cognitive defects in engrailed-2 knockout mice. PLoS ONE, doi: 10.1371/journal.pone.0040914.

Byrne, J.H.; Voogt, M.; Turner, K.M.; Eyles, D.W.; MacGrath, J.J.; Burne, T.H.J. (2013). The impact of adult vitamin D dificiency on behaviour and brain function in male sprague-dawley rats. Plos one, 8(8), doi:10.13714/journal.pone0071593

Christie, L.A.; Acharya, M.M.; Parihar, V.K.; Nguyen, A.; Martirosian, V.; Limoli, C.L. (2012). Impaired cognitive function and hippocampal neurogenesis following cancer chemotherapy. Clinical Cancer Research, doi: 10.1158/1078-0432.CCR-11-2000.

Dalm, S.; Visser, L. de; Spruijt, B.M.; Oitzl, M.S. (2009). Repeated rat exposure inhibits the circadian activity patterns of C57BL/6J mice in the home cage. Behavioural Brain Research196, 84-92.

Jones-Davis, D.M.; Yang, M.; Rider, E.; Osbun, N.C.; Gente, G.J. da; Li, J.; Katz, A.M.; Weber, M.D.; Sen, S.; Crawley, J.; Sherr, E.H. (2013). Quantitative trait loci for interhemispheric commissure development and social behaviors in the BTBR T+ tf/J mouse model of autism. PLoS ONE, doi: 10.1371/journal.pone.0061829.

Kalueff, A.V.; Olivier, J.D.A.; Nonkes, L.J.P.; Homberg, J.R. (2010). Conserved role for the serotonin transporter gene in rat and mouse neurobehavioral endophenotypes. Neuroscience and Biobehavioral Reviews34, 373-386.

Kang, J.; Kang, N.; Yu, Y.; Zhang, J.; Petersen, N.; Tian, G.F.; Nedergaard, M. (2010). Sulforhodamine 101 induces long-term potentiation of intrinsic excitability and synaptic efficacy in hippocampal ca1 pyramidal neuroons. Neuroscience169, 1601-1609.

Kopsida, E. (2012). Sexual differentiation of the brain: investigating the role of Sry using animal models. PhD Thesis, Cardiff University.

Lukkes, J.L.; Mokin, M.V.; Scholl, J.L.; Forster, G.L. (2009). Adult rats exposed to early-life social isolation exhibit increased anxiety and conditioned fear behavior, and altered hormonal stress responses. Hormones and Behavior55, 248-256.

Maroteaux, G.; Loos, M.; Sluis, S. van der; Koopmans, B.; Aarts, E.; Gassen, K. van; Geurts, A.; The NeuroBSIK Mouse Phenomics Consortium, Largaespada, D.A.; Sprujit, B.M.; Stiedl, O.; Smit, A.B.; Verhage, M. (2012). High-throughput phenotyping of avoidance learning in mice discriminates different genotypes and identifies a novel gene.Genes, Brain and Behavior, 11, 772-784.

Mooij-van Malsen, J.G. de; Lith, van, H.A.; Laarakker, M.C.; Brandys. M.K.; Oppelaar, H.; Collier, D.A.; Oliver, B.; Breen, G.; Kas. M.J. (2013). Cross-species genetics converge to TLL2 for mouse avoidance behaviour and human bipolar disorder. Genes, Brain and Behavior, doi: 10.1111/gbb.12055.

Mooij-van Malsen, J.G. de; Vinkers, C.H.; Peterse, D.P.; Olivier, B.; Kas, M.J.H (2010). Cross-species behavioural genetics: A starting point for unravelling the Neurobiology of human psychiatric disorders. Neuro-Psychopharmacology & Biological Psychiatry, doi:10.1016/j.pnpbp.2010.10.003.

Mooij-van Malsen, J.G. de;  Lith, H.A. van; Oppelaar, H.;  Hendriks, J.; Wit, M. de; Kostrzewa, E.; Breen, G.; Collier, D.A.; Olivier, B.; Kas, M.J. (2009). Interspecies Trait Genetics Reveals Association of Adcy8 with Mouse Avoidance Behavior and a Human Mood Disorder. Biological Psychiatry, article in press, doi: 10.1016/j.biopsych.2009.06.016.

Moscardo, E.; Rostello, C. (2010). An integrated system for video and telemetric electroencephalographic recording to measure behavioural and physiological parameters. Journal of Pharmacological and Toxicological Methods62, 64-71.

Moy, S.S.; Nikolova, V.D.; Riddick, N.V.; Baker, L.K.; Koller, B.H. (2012). Preweaning sensorimotor deficits and adolescent hypersociability in Grin1 knockdown mice. Developmental Neuroscience, doi: 10.1159/000337984.

Mul, J.D.; Boxtel, R. van; Bergen, D.J.M.; Brans, M.A.D.; Brakke, J.H.; Toonen, P.W.; Garner, K.M.; Adan, R.A.H.; Cuppen, E. (2012). Melanocortin Receptor 4 Deficiency Affects body weight regulation, grooming behavior, and substrate preference in the rat. Obesity, doi: 10.1038/oby.2011.81.

Muralidharan, A.; Wyse, B.D.; Smith, M.T. (2013). Optimization and characterization of a rat model of prostate cancer-induced bone pain using behavioral, pharmacological, radiological, histological and immunohistochemical methods. Pharmacology, Biochemistry and Behavior, 106, 33-46.

Olivier, J.D.A.; Valles, A.; Heesch, van, F.: Afrasiab-Middelman, A.; Roelofs, J.P.M.; Jonkers, M.; Peters, E.J.; Korte-Bouws, G.A.H.; Dederen, J.P.; Kiliaan, A.J.; Martens, G.J.; Schubert, D.; Homberg, J.R. (2011). Fluoxetine administration to pregnant rats increases anxiety-related behavior in the offspring. Psychopharmacology, doi10.1007/s00213-011-2299-z.

Paradiso, B.; Zucchini, S.; Su, T.; Bovolenta, R.; Berto, E.; Marconi, P.; Marzola, A.; Navarro Mora, G.; Fabene, P.F.; Simonato, M. (2011). Localized overexpression of FGF-2 and BDNF in hippocampus reduces mossy fiber sprouting and spontaneous seizures up to 4 weeks after pilocarpine-induced status epilepticus. Epilepsia, 52, 572-578.

Pham, J.; Cabrera, S.M.; Sanchis-Segura, C.; Wood, M.A. (2009). Automated scoring of fear-related behavior using EthoVision software. Journal of Neuroscience Methods178, 323-326.

Ryan, B.C.; Young, N.B.; Crawley, J.N.; Bodfish, J.W.; Moy, S.S. (2009). Social deficits, stereotypy and early emergence of repetitive behavior in the C58/J inbred mouse strain. Behavioural Brain Research, article in press, doi:10.1016/j.bbr.2009.11.031.

Scheffzük, C.; Kukushka, V.I.; Vyssotski, A.L.; Draguhn, A.; Tort, A.B.L.; Brankačk, J. (2012). Global slowing of network oscillations in mouse neocortex by diazepam. Neuropharmacology, 65, 123-133.

Schipper, P.; Nonkes, L.J.P.; Karel, P.; Kiliaan, A.J.; Homberg, J.R. (2011). Serotonin transporter genotype x construction stress interaction in rats. Behavioural Brain Research, 223, 169-175.

Silverman, J.L.; Yang, M.; Lord, C.; Crawley, J.N. (2010). Behavioural phenotyping assays for mouse models of autism. Nature reviews neuroscience11, 490-502.

Silverman, J.L.; Turner, S.M.; Barkan, C.L.; Tolu, S.S.; Saxena, R.; Hung, A.Y.; Sheng, M.; Crawley, J.N. (2010). Sociability and motor functions in Shank1 mutant mice. Brain research, 1380, 120-137.

Smits, S.M.; Noorlander, C.W.; Kas, M.J.H.; Ramakers, G.M.J.; Smidt, M.P. (2008). Alterations in serotonin signalling are involved in the hyperactivity of Pitx3-deficient mice. European Journal of Neuroscience27, 388-395.

Trent, S.; Dennehy, A.; Richardson, H.; Ojarikre, O.A.; Burgoyne, P.S.; Humby, T.; Davies, W. (2012). Steroid sulfatase-deficient mice exhibit endophenotypes relevant to attention deficit hyperactivity disorder. Psychoneuroendocrinology, doi:10.1016/j.psyneuen.2011.06.006.

Valor, L.M.; Pulopulos, M.M.; Jimenez-Minchan, M.; Oliveras, R.; Lutz, B.; Barco, A. (2011). Ablation of CBP in Forebrain Principal Neurons causes modest memory and Transcriptional Defects and a dramatic reduction of Histone acetylation but does not affect cell viability. Journal of Neuroscience, 31, 1652-1663.

Yang, M.; Bozdagi, O.; Scattoni, M.L.; Wöhr, M.; Roullet, F.I., Katz, A.M.; Abrams, D.N.; Kalikhman, D.; Simon, H.; Woldeyohannes, L.; Zhang, J.Y.; Harris, M.J.; Saxena, R.; Silverman, J.L.; Buxbaum, J.D.; Crawley, J.N. (2012). Reduced excitatory neurotransmission and mild autism-relevant phenotypes in adolescent Shank3 null mutant mice. The Journal of Neuroscience, 32(19), 6525-6541.

Yang, M.; Abrams, D.N.; Zhang, J.Y.; Weber, M.D.; Katz, A.M.; Clarke, A.M.; Silverman, J.L.; Crawley. J.N. (2012). Low sociability in BTBR T+tf/J mice is independent of partner strain. Physiology & Behavior, doi: 10.1016/j.physbeh.2011.12.025.

Yang, E.J.; Lin, E.W.; Hensch, T.K. (2012). Critical period for acoustic preference in mice. PNAS, 109(2), 17213-17220.

Yang, M.; Clarke, A.M.; Crawley, J.N.  (2009). Postnatal lesion evidence against a primary role for the corpus callosum in mouse sociability. European Journal of Neuroscience, 29, 1663-1677